\documentclass{InsightArticle}

\usepackage[dvips]{graphicx}

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%
%  hyperref should be the last package to be loaded.
%
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\usepackage[dvips,
bookmarks,
bookmarksopen,
backref,
colorlinks,linkcolor={blue},citecolor={blue},urlcolor={blue},
]{hyperref}


\title{Generating a Deformation Field from an itk::Transform}

% 
% NOTE: This is the last number of the "handle" URL that 
% The Insight Journal assigns to your paper as part of the
% submission process. Please replace the number "1338" with
% the actual handle number that you get assigned.
%
\newcommand{\IJhandlerIDnumber}{1338}

% Increment the release number whenever significant changes are made.
% The author and/or editor can define 'significant' however they like.
\release{0.00}

% At minimum, give your name and an email address.  You can include a
% snail-mail address if you like.
\author{Marius Staring$^{1}$}
\authoraddress{$^{1}$Leiden University Medical Center, The Netherlands}

\begin{document}

%
% Add hyperlink to the web location and license of the paper.
% The argument of this command is the handler identifier given
% by the Insight Journal to this paper.
% 
\IJhandlefooter{\IJhandlerIDnumber}


\ifpdf
\else
   %
   % Commands for including Graphics when using latex
   % 
   \DeclareGraphicsExtensions{.eps,.jpg,.gif,.tiff,.bmp,.png}
   \DeclareGraphicsRule{.jpg}{eps}{.jpg.bb}{`convert #1 eps:-}
   \DeclareGraphicsRule{.gif}{eps}{.gif.bb}{`convert #1 eps:-}
   \DeclareGraphicsRule{.tiff}{eps}{.tiff.bb}{`convert #1 eps:-}
   \DeclareGraphicsRule{.bmp}{eps}{.bmp.bb}{`convert #1 eps:-}
   \DeclareGraphicsRule{.png}{eps}{.png.bb}{`convert #1 eps:-}
\fi


\maketitle

\ifhtml
\chapter*{Front Matter\label{front}}
\fi


% The abstract should be a paragraph or two long, and describe the
% scope of the document.
\begin{abstract}
\noindent
This document describes a new class that takes an itk::Transform and evaluates the deformation at points in a user-defined region. The class is implemented using the Insight Toolkit \url{www.itk.org}. \\
This paper is accompanied with the source code, input data, parameters and
output data that the authors used for validating the algorithm described in
this paper.

\end{abstract}

\IJhandlenote{\IJhandlerIDnumber}

\tableofcontents

intro

\section{sec}

code snippets

\small
\begin{verbatim}
typedef itk::Image< unsigned char, 3 > ImageType;

ImageType::Pointer image = ImageType::New();
\end{verbatim}
\normalsize

\doxygen{ImageToImageFilter}

\code{SetNumberOfIterations()}


\appendix

\section{This is an Appendix}

To create an appendix in a Insight HOWTO document, use markup like
this:

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%
%  Example on how to insert a figure
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\begin{figure}
\center
\includegraphics[width=0.8\textwidth]{RegistrationComponentsDiagram.eps}
\itkcaption[Registration Framework Components]{The basic components of the
registration framework are two input images, a transform, a metric, an
interpolator and an optimizer.}
\label{fig:RegistrationComponents}
\end{figure}



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%  Insert the bibliography using BibTeX
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\bibliographystyle{plain}
\bibliography{InsightJournal}


\end{document}