#List two input images
BrainProtonDensitySliceBorder20.png Brain_deformed.mha
#Masks for each image, respectively (if same mask, enter mask twice)
BrainProtonDensitySliceBorder20Mask.png Brain_deformed_mask.mha
#Percent of edges to be detected
10
#File names for output Edge files
Brain_edges.mha Brain_deformed_edges.mha
#Local distance map output file name
Brain_gldmap.mha
#Do you need contrast enhancement (No[0], Yes[1])
0
#number of threads
1
#Metric for local distance map (local Hausdorff [HD],grayscale Hausdorff [GHD], robust [RGHD])
GHD
#if GHD or RGHD, fill in the following lines, if HD ignore
#Neighborhood radius for grayscale image creation
3
#tolerance for grayscale HD
1
#Maximum deformation (to limit search window)
10
#if RGHD, fill in the following, otherwise ignore
#Radius size of robust statistic window
5
#robust statistic percentage
.8
#Minimum number of elements needed in robust statistic window
2