# empty lines and comment lines (beginning with '#') are ignored
# all other lines contain a <key>-<value> pair (separated by an
# arbitrary number of whitespace characters)
# <key> and <value> must not contain spaces


# FIXED_INPUT_FILENAME /home/data/volume_fixed.hdr
# FIXED_INPUT_FILENAME D:/Work/Data/volume_fixed.hdr

# MOVING_INPUT_FILENAME /home/data/volume_moving.hdr
# MOVING_INPUT_FILENAME D:/Work/Data/volume_moving.hdr


# do we need an output displacement field written? for large datasets this 
# requires lots of space on disk!
WRITE_DISPLACEMENT_FIELD false

# this value is written everywhere, where the resampler goes out of bounds
RESAMPLE_DEFAULT_VALUE -1100

# there is a large number of different registration modes
# please note that you have to specify the parameters for each registration mode
# separately in one of the following sections

# currently the modes are <demons, symmetric_demons, curvature, levelset_motion, 
# fast_block_matching, diffeomorphic_demons>

REGISTRATION_MODE demons



# DEMONS parameters
DEMONS_NR_LEVELS 3
DEMONS_NR_ITERATIONS1 20
DEMONS_NR_ITERATIONS2 10


# FAST_DEMONS parameters
FAST_DEMONS_NR_LEVELS 3
FAST_DEMONS_NR_ITERATIONS1 20
FAST_DEMONS_NR_ITERATIONS2 10


# SYMMETRIC_DEMONS parameters
SYMMETRIC_DEMONS_NR_LEVELS 3
SYMMETRIC_DEMONS_NR_ITERATIONS1 20
SYMMETRIC_DEMONS_NR_ITERATIONS2 10



# LEVELSET MOTION parameters
LEVELSET_MOTION_NR_LEVELS 3
LEVELSET_MOTION_NR_ITERATIONS1 20
LEVELSET_MOTION_NR_ITERATIONS2 10

# CURVATURE parameters
CURVATURE_NR_LEVELS 3
CURVATURE_NR_ITERATIONS1 20
CURVATURE_NR_ITERATIONS2 10


# FAST_BLOCK_MATCHING
FAST_BLOCK_MATCHING_REGULARIZATION 2.0
FAST_BLOCK_MATCHING_SIMILARITY 3.0
FAST_BLOCK_MATCHING_LEVELS_NOT_TO_COMPUTE 0

# DIFFEOMORPHIC_DEMONS
DIFFEOMORPHIC_DEMONS_NR_LEVELS 5
DIFFEOMORPHIC_DEMONS_NR_ITERATIONS1 100
DIFFEOMORPHIC_DEMONS_NR_ITERATIONS2 100
DIFFEOMORPHIC_DEMONS_SIGMA_DEFORMATION_FIELD 3.0
DIFFEOMORPHIC_DEMONS_SIGMA_UPDATE_FIELD 0.0
DIFFEOMORPHIC_DEMONS_MAX_LENGTH_UPDATE_FIELD 2.0
DIFFEOMORPHIC_DEMONS_FORCE_GRADIENT_TYPE 0