\relax 
\ifx\hyper@anchor\@undefined
\global \let \oldcontentsline\contentsline
\gdef \contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
\global \let \oldnewlabel\newlabel
\gdef \newlabel#1#2{\newlabelxx{#1}#2}
\gdef \newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
\AtEndDocument{\let \contentsline\oldcontentsline
\let \newlabel\oldnewlabel}
\else
\global \let \hyper@last\relax 
\fi

\providecommand*\HyPL@Entry[1]{}
\HyPL@Entry{0<</S/D>>}
\citation{Yoo2002a}
\citation{WrapITK}
\citation{Chu2005a}
\citation{Mueller2007b}
\citation{SciRun2007a}
\citation{MeVisLab2007a}
\citation{VolView2007a}
\citation{Slicer2007a}
\@writefile{toc}{\contentsline {section}{\numberline {1}Introduction}{2}{section.1}}
\@writefile{brf}{\backcite{Yoo2002a}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{WrapITK}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{Chu2005a}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{Mueller2007b}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{SciRun2007a}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{MeVisLab2007a}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{VolView2007a}{{2}{1}{section.1}}}
\@writefile{brf}{\backcite{Slicer2007a}{{2}{1}{section.1}}}
\@writefile{toc}{\contentsline {section}{\numberline {2}Design}{3}{section.2}}
\@writefile{toc}{\contentsline {subsection}{\numberline {2.1}Framework}{3}{subsection.2.1}}
\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces The SharpImage application framework components, including the main window and open image dialog.}}{3}{figure.1}}
\newlabel{fig:Design:SharpImageApplicationFramework}{{1}{3}{The SharpImage application framework components, including the main window and open image dialog}{figure.1}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Main Window}}}{3}{figure.1}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Open Image Dialog}}}{3}{figure.1}}
\@writefile{toc}{\contentsline {subsection}{\numberline {2.2}Scripts}{4}{subsection.2.2}}
\@writefile{lof}{\contentsline {figure}{\numberline {2}{\ignorespaces A UML diagram depicting the inheritance hierarchy of SharpImage scripts. In this figure the \texttt  {CurvatureFlowScript}\normalfont   is used as an example.}}{4}{figure.2}}
\newlabel{fig:Design:SharpImageScriptUML}{{2}{4}{A UML diagram depicting the inheritance hierarchy of SharpImage scripts. In this figure the \code {CurvatureFlowScript} is used as an example}{figure.2}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {2.3}Renderers}{4}{subsection.2.3}}
\citation{RezkSalama2001a}
\citation{Kniss2002a}
\@writefile{brf}{\backcite{RezkSalama2001a, Kniss2002a}{{5}{2.3}{subsection.2.3}}}
\@writefile{lof}{\contentsline {figure}{\numberline {3}{\ignorespaces The SharpImage renderers: \texttt  {siGdiSliceRenderer}\normalfont   and \texttt  {siVolumeRenderer}\normalfont  .}}{5}{figure.3}}
\newlabel{fig:Design:Renderers}{{3}{5}{The SharpImage renderers: \code {siGdiSliceRenderer} and \code {siVolumeRenderer}}{figure.3}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Slice Renderer}}}{5}{figure.3}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Volume Renderer}}}{5}{figure.3}}
\@writefile{toc}{\contentsline {section}{\numberline {3}Quick Start Guide}{6}{section.3}}
\@writefile{toc}{\contentsline {subsection}{\numberline {3.1}Installation}{6}{subsection.3.1}}
\@writefile{toc}{\contentsline {subsection}{\numberline {3.2}Usage}{6}{subsection.3.2}}
\@writefile{toc}{\contentsline {section}{\numberline {4}Examples}{8}{section.4}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.1}Open}{8}{subsection.4.1}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.2}Save}{8}{subsection.4.2}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.3}Change Properties}{8}{subsection.4.3}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.4}Threshold}{9}{subsection.4.4}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.5}Cast}{9}{subsection.4.5}}
\@writefile{lof}{\contentsline {figure}{\numberline {4}{\ignorespaces Binary thresholding: \texttt  {BinaryThresholdWithForm}\normalfont   displays the result as a binary image, whereas \texttt  {BinaryThresholdAsLabel}\normalfont   displays the result as a label.}}{10}{figure.4}}
\newlabel{fig:Examples:BinaryThreshold}{{4}{10}{Binary thresholding: \code {BinaryThresholdWithForm} displays the result as a binary image, whereas \code {BinaryThresholdAsLabel} displays the result as a label}{figure.4}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {\texttt {BinaryThresholdWithForm}\normalfont }}}{10}{figure.4}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {\texttt {BinaryThresholdAsLabel}\normalfont }}}{10}{figure.4}}
\@writefile{lof}{\contentsline {figure}{\numberline {5}{\ignorespaces This figure depicts the same image with \texttt  {unsigned char}\normalfont   pixel type (left) and \texttt  {float}\normalfont   pixel type (right). The \texttt  {float}\normalfont   image is automatically rescaled to consume the entire [0,255] range. The \texttt  {unsigned char}\normalfont   image must be explicitly rescaled using the \texttt  {RescaleIntenityToUC}\normalfont   command.}}{10}{figure.5}}
\newlabel{fig:Examples:Intensity}{{5}{10}{This figure depicts the same image with \code {unsigned char} pixel type (left) and \code {float} pixel type (right). The \code {float} image is automatically rescaled to consume the entire [0,255] range. The \code {unsigned char} image must be explicitly rescaled using the \code {RescaleIntenityToUC} command}{figure.5}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.6}Intensity Mapping}{10}{subsection.4.6}}
\@writefile{lof}{\contentsline {figure}{\numberline {6}{\ignorespaces This figure depicts the result of applying the \texttt  {Sigmoid}\normalfont   script.}}{11}{figure.6}}
\newlabel{fig:Examples:Sigmoid}{{6}{11}{This figure depicts the result of applying the \code {Sigmoid} script}{figure.6}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.7}Gradients}{11}{subsection.4.7}}
\@writefile{lof}{\contentsline {figure}{\numberline {7}{\ignorespaces This figure depicts the results of applying the \texttt  {GradientRecursiveGaussian}\normalfont   and \texttt  {GradientMagnitudeRecursiveGaussian}\normalfont   scripts with \texttt  {Sigma=1.0}\normalfont  .}}{12}{figure.7}}
\newlabel{fig:Examples:Gradient}{{7}{12}{This figure depicts the results of applying the \code {GradientRecursiveGaussian} and \code {GradientMagnitudeRecursiveGaussian} scripts with \code {Sigma=1.0}}{figure.7}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.8}Mathematical Morphology}{12}{subsection.4.8}}
\@writefile{lof}{\contentsline {figure}{\numberline {8}{\ignorespaces This figure depicts different morphological operations.}}{13}{figure.8}}
\newlabel{fig:Examples:Morphology}{{8}{13}{This figure depicts different morphological operations}{figure.8}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.9}Noise}{13}{subsection.4.9}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.10}Pixel Math}{13}{subsection.4.10}}
\@writefile{lof}{\contentsline {figure}{\numberline {9}{\ignorespaces This figure depicts results from adding noise to an image.}}{14}{figure.9}}
\newlabel{fig:Examples:Noise}{{9}{14}{This figure depicts results from adding noise to an image}{figure.9}{}}
\@writefile{lof}{\contentsline {figure}{\numberline {10}{\ignorespaces This figure depicts results from the \texttt  {Median}\normalfont  , \texttt  {GradientAnisotropicDiffusion}\normalfont  , and \texttt  {CurvatureFlow}\normalfont   denoising filters.}}{14}{figure.10}}
\newlabel{fig:Examples:Denoising}{{10}{14}{This figure depicts results from the \code {Median}, \code {GradientAnisotropicDiffusion}, and \code {CurvatureFlow} denoising filters}{figure.10}{}}
\citation{Ibanez2007a}
\@writefile{lof}{\contentsline {figure}{\numberline {11}{\ignorespaces A demonstration of the \texttt  {BinaryPixelMath}\normalfont   \texttt  {Mask}\normalfont   operation.}}{15}{figure.11}}
\newlabel{fig:Examples:PixelMath}{{11}{15}{A demonstration of the \code {BinaryPixelMath} \code {Mask} operation}{figure.11}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Input1}}}{15}{figure.11}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Input2}}}{15}{figure.11}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(c)}{\ignorespaces {Result}}}{15}{figure.11}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.11}Region growing}{15}{subsection.4.11}}
\@writefile{lof}{\contentsline {figure}{\numberline {12}{\ignorespaces \texttt  {ConnectedThreshold}\normalfont   region growing from a user specified seed point.}}{15}{figure.12}}
\newlabel{fig:Examples:ConnectedThreshold}{{12}{15}{\code {ConnectedThreshold} region growing from a user specified seed point}{figure.12}{}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.12}Active Contours}{15}{subsection.4.12}}
\citation{Ibanez2007a}
\citation{Ibanez2007a}
\@writefile{brf}{\backcite{Ibanez2007a}{{16}{4.12}{subsection.4.12}}}
\@writefile{lof}{\contentsline {figure}{\numberline {13}{\ignorespaces The \texttt  {FastMarchingImageFilter}\normalfont   example from the ITK Software Guide \cite  [Sec. 9.3.1]{Ibanez2007a} can be reproduced using six simple commands.}}{16}{figure.13}}
\@writefile{brf}{\backcite{Ibanez2007a}{{16}{13}{figure.13}}}
\newlabel{fig:Examples:FastMarching}{{13}{16}{The \code {FastMarchingImageFilter} example from the ITK Software Guide \cite [Sec. 9.3.1]{Ibanez2007a} can be reproduced using six simple commands}{figure.13}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Input}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Smooth}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(c)}{\ignorespaces {Gradient}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(d)}{\ignorespaces {Sigmoid}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(e)}{\ignorespaces {Arrival}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(f)}{\ignorespaces {Threshold}}}{16}{figure.13}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(g)}{\ignorespaces {Label}}}{16}{figure.13}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.13}Volume Rendering}{16}{subsection.4.13}}
\@writefile{lof}{\contentsline {figure}{\numberline {14}{\ignorespaces The \texttt  {LevelSetSpeed}\normalfont   script in action.}}{17}{figure.14}}
\newlabel{fig:Examples:LevelSetSpeed}{{14}{17}{The \code {LevelSetSpeed} script in action}{figure.14}{}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash v\textendash copy.frag}{17}{lstlisting.-27}}
\citation{Kniss2002a}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:Oblique}{{15(a)}{18}{Subfigure 15(a)\relax }{subfigure.15.1}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:Oblique}{{(a)}{18}{Subfigure 15(a)\relax }{subfigure.15.1}{}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:MIP}{{15(b)}{18}{Subfigure 15(b)\relax }{subfigure.15.2}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:MIP}{{(b)}{18}{Subfigure 15(b)\relax }{subfigure.15.2}{}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:Value}{{15(c)}{18}{Subfigure 15(c)\relax }{subfigure.15.3}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:Value}{{(c)}{18}{Subfigure 15(c)\relax }{subfigure.15.3}{}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:ValueMagnitude}{{15(d)}{18}{Subfigure 15(d)\relax }{subfigure.15.4}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:ValueMagnitude}{{(d)}{18}{Subfigure 15(d)\relax }{subfigure.15.4}{}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:Phong}{{15(e)}{18}{Subfigure 15(e)\relax }{subfigure.15.5}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:Phong}{{(e)}{18}{Subfigure 15(e)\relax }{subfigure.15.5}{}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:Silhouette}{{15(f)}{18}{Subfigure 15(f)\relax }{subfigure.15.6}{}}
\newlabel{sub@fig:Examples:VolumeRendering:VisibleHuman:Silhouette}{{(f)}{18}{Subfigure 15(f)\relax }{subfigure.15.6}{}}
\@writefile{lof}{\contentsline {figure}{\numberline {15}{\ignorespaces Results from different fragment shaders and renderer settings.}}{18}{figure.15}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman}{{15}{18}{Results from different fragment shaders and renderer settings}{figure.15}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Oblique Section}}}{18}{figure.15}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Minimum Intensity Projection}}}{18}{figure.15}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(c)}{\ignorespaces {Value}}}{18}{figure.15}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(d)}{\ignorespaces {Value-Magnitude}}}{18}{figure.15}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(e)}{\ignorespaces {Phong}}}{18}{figure.15}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(f)}{\ignorespaces {Silhouette}}}{18}{figure.15}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash v.frag}{18}{lstlisting.-28}}
\@writefile{brf}{\backcite{Kniss2002a}{{18}{4.13}{lstnumber.-28.10}}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash vm\textendash noadjust.frag}{18}{lstlisting.-29}}
\citation{Weiler2000a}
\@writefile{brf}{\backcite{Weiler2000a}{{19}{4.13}{lstnumber.-29.10}}}
\newlabel{eq:Shader:AdjustSamplingRate}{{1}{19}{Volume Rendering\relax }{equation.4.1}{}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash vm.frag}{19}{lstlisting.-30}}
\newlabel{eq:Shader:PhongModel}{{2}{19}{Volume Rendering\relax }{equation.4.2}{}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash vm\textendash phong.frag}{19}{lstlisting.-31}}
\citation{Rheingans2001a}
\@writefile{brf}{\backcite{Rheingans2001a}{{20}{4.13}{figure.16}}}
\@writefile{lol}{\contentsline {lstlisting}{../Source/Rendering/VolumeRendering/shader\textendash vm\textendash enhance.frag}{20}{lstlisting.-32}}
\@writefile{lof}{\contentsline {figure}{\numberline {16}{\ignorespaces A comparison of value-magnitude volume renderings generated with different sampling rates. First row: no alpha adjustment. Second row: with alpha adjustment.}}{21}{figure.16}}
\newlabel{fig:Examples:VolumeRendering:VisibleHuman:NoAdjust}{{16}{21}{A comparison of value-magnitude volume renderings generated with different sampling rates. First row: no alpha adjustment. Second row: with alpha adjustment}{figure.16}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {$r_s=0.1$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {$r_s=0.4$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(c)}{\ignorespaces {$r_s=1.6$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(d)}{\ignorespaces {$r_s=6.4$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(e)}{\ignorespaces {$r_s=0.1$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(f)}{\ignorespaces {$r_s=0.4$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(g)}{\ignorespaces {$r_s=1.6$}}}{21}{figure.16}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(h)}{\ignorespaces {$r_s=6.4$}}}{21}{figure.16}}
\@writefile{toc}{\contentsline {subsection}{\numberline {4.14}Extending SharpImage}{21}{subsection.4.14}}
\@writefile{lol}{\contentsline {lstlisting}{extend/Custom1.py}{22}{lstlisting.-33}}
\@writefile{toc}{\contentsline {section}{\numberline {5}Conclusion}{23}{section.5}}
\@writefile{lof}{\contentsline {figure}{\numberline {17}{\ignorespaces Steps for extending SharpImage.}}{24}{figure.17}}
\newlabel{fig:Examples:Extend:Steps}{{17}{24}{Steps for extending SharpImage}{figure.17}{}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(a)}{\ignorespaces {Create a new project}}}{24}{figure.17}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(b)}{\ignorespaces {Add reference}}}{24}{figure.17}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(c)}{\ignorespaces {Edit project properties}}}{24}{figure.17}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(d)}{\ignorespaces {Design the form}}}{24}{figure.17}}
\@writefile{lof}{\contentsline {subfigure}{\numberline{(e)}{\ignorespaces {Invoke the script}}}{24}{figure.17}}
\bibstyle{plain}
\bibdata{article}
\bibcite{MeVisLab2007a}{1}
\bibcite{SciRun2007a}{2}
\bibcite{Slicer2007a}{3}
\bibcite{VolView2007a}{4}
\bibcite{Chu2005a}{5}
\bibcite{Ibanez2007a}{6}
\bibcite{Kniss2002a}{7}
\bibcite{WrapITK}{8}
\bibcite{Mueller2007b}{9}
\bibcite{RezkSalama2001a}{10}
\bibcite{Rheingans2001a}{11}
\bibcite{Weiler2000a}{12}
\bibcite{Yoo2002a}{13}